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  "Title": "Create Complex UpSet Plots Using 'ggplot2' Components",
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  "Description": "UpSet plots are an improvement over Venn Diagram for set\noverlap visualizations. Striving to bring the best of the\n'UpSetR' and 'ggplot2', this package offers a way to create\ncomplex overlap visualisations, using simple and familiar\ntools, i.e. geoms of 'ggplot2'. For introduction to UpSet\nconcept, see Lex et al. (2014) <doi:10.1109/TVCG.2014.2346248>.",
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      "title": "Generate mapping for labeling percentages",
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      "topics": [
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    },
    {
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      "topics": [
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      ]
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      "topics": [
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      "topics": [
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